Alamut - Mutation Interpretation Software
Are you a molecular biologist studying human DNA sequence variations? Alamut
is tailor-made for you.
Canova - CNV Analysis
Canova helps analyzing copy number variations detected in
array CGH experiments.
This prototype web tool is freely available
here.
Genetic Literature Text Mining
Alamut uses Talamut, a search engine dedicated to genetic mutations cited in PubMed. You can try it here.
You can also try our experimental tool Correl: it displays graphs of correlated genes, based on statistical frequencies of co-occurrent terms in literature.
GeneSplicer
We have compiled
GeneSplicer, a system for detecting splice sites, for Windows and Mac OS X.
The full package is available here.
EMBOSSWin
EMBOSSWin is a Windows port of EMBOSS, a free Open Source software analysis package specially developed for the needs of the molecular biology user community.
EMBOSSWin is available here.
A Python ABIF (.ab1/.fsa) file reader
If you need to read trace files from Applied sequencers (".ab1" files),
or fragment analysis files (".fsa" files), in Python, you can freely use this code.
It is released under the GNU General Public License.
ABIFReader.py is available here.
Looking for a great multiple alignment editor?
Try Jalview from the University of Dundee.
"Drag-and-zoom" in the UCSC Genome Browser
There is a nice new feature in the UCSC Genome Browser: It is now possible to position your mouse over a location in the Base Position track, at the top of the browser image and define a zoom range by moving the mouse to a second place within the image. The browser will redraw at the new coordinates when the mouse button is released.
Services
Interactive Biosoftware is a team of computer scientists specialized in bioinformatics, graphical user interfaces, databases and natural language processing.
We provide consulting services and custom software development in the biomedical area on demand. Please see the Contact page.