New Features in Alamut® version 2.1 (Dec 2011)

• New extended access tool: fast access to information by position, by name or identifier, by variation or list of variations. The latter is specially suitable for NGS results analysis.
• Input, visualize, and manage sequence-based private annotations (e.g. primers, probes). Visualize data available in standard bioinformatics file formats (e.g., BED, GFF).
• Enhanced mutation reports inluding missense and splicing predictions, phyloP conservation, references to dbSNP and HGMD® for any variant type.
• New micro-RNA prediction module.
• New transcript structure export and cDNA sequence pretty-print functionalities.
• Ability to define and manage multiple folders of variant and annotation files.
• Integration of annotations from BIOBASE Genome Trax™.
• New LOVD variant search functionality.
• New Café Variome and enhanced DMuDB export functionalities.
• Enhanced splicing reports highlighting or restricted to natural splice sites.
• New free comment field in mutation windows and rich text input in occurrence fields.
• Ability to define default exon naming type.
• Up-to-date conformance to HGVS nomenclature version 2.0 (description of the stop codon at protein/amino acid level changed from 'X' to '*').
• SNP exports now include cDNA coordinates.
• Numerous usability enhancements.